Mid-term exam syllabus, Biochem-506: Ch-3 and Ch-4 of Lehninger. 

Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains; Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc; 

…. PLUS…. First 200 MCQs from chapters 3 of the book ” MCQs in Biochemistry”. MCQs from the taught concepts and book chapters will also appear in the exam.

Final exam syllabus, Biochem-506: Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications.

…. PLUS…. All MCQs from chapters 3 of the book ” MCQs in Biochemistry”. MCQs from the taught concepts and book chapters will also appear in the exam.

                                                        ______________________________________________________________________________

 

Assignments and presentations: 

  1. The weightage of the assignment and presentation will be decided later. 
  2. Start preparing your presentations and assignments.
  3. The presentations will also be started right after the mid-term exam.
  4. PPT file should not contain any designing/colours other than figures and diagrams.
  5. Slides should be in 16X9 ratio.
  6. Fonts of all header should be same and of all other text should be same. 
  7. For detailed guidelines about the presentation of research article, visit: https://www.lifesciencesorg.combiochem-720/
  8. Download the template ppt file to make your presentation. The link is here (copy this link and paste in a new tab).
  9. Strictly follow the ppt format and it is better if you write and paste your material in the same ppt file.

K. General Question to be asked during the presentation

  1. 1) Pathway or importance of gene/technology/discovery
  2. 2) Rationale
  3. 3) Conclusion of the full article
  4. 4) Conclusion of every figure
  5. 5) New findings presented in the article
  6. 6) Applications of the findings
  7. 7) Future prospective
  8. 8) Applications of the work
  9. 9) Principle of every technique used in the research article

Moreover, provide me a printed summary of your article containing the above headings given under ‘K’.

L. During Presentations, for EVERY FIGURE and graph, we may ask:

1. The Principle of the experiment.
2. The Reason for doing the experiment/s.
3. The Physiological importance of the figure.
4. The Conclusions of the figure
5. Prepare well objectively and subjectively

Biochem-506: Start preparing your presentations and assignments….. Assignment submission is the first class of next month, October 2022. The presentations will also be started after mid-term exam.

NO EXCUSE WILL BE ACCEPTED

______________________________________________________________________________

MCQs will be taken from the text-book and from chapter 3 of the book ” MCQs in Biochemistry”.

Link to download this book is given below:

https://b-ok.cc/dl/1055171/2292c5

______________________________________________________________________________

Microsoft Teams meeting
Join on your computer, mobile app or room device

Click here to join the meeting

Meeting ID: 316 824 288 013
Passcode: WNyjeA

 
 ______________________________________________________________________________

Microsoft teams will be used whenever online classes will be held. You must make your first name as your registration number. 

2017-ag-9382 Haidar Iftikhar

2017-ag-10077 Ahmad Faraz

Link to download the book ( MCQs in Biochemistry) is here.

 

BIOCHEM-506                   BIOCHEMISTRY OF PROTEINS                       3(3-0)

 

Theory

Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains; Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc; Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications.

 

Suggested Readings:

  1. Stryer, L. 2012. Biochemistry, 7th Edition, W. H. Freeman and Co. Lab Manual in Biochemistry, Immunology and Biotechnology, Arti Nigram, Archana Ayyagari. Tata McGraw-Hill Publishing Company Limited, New Delhi.
  2. Ferrier, D. R. 2017. Biochemistry: Lippincott’s Illustrated Reviews. 7th Lippincott Williams and Wilkins. U.S.A.
  3. Nelson, D.L and M.M. Cox. 2017. Lehninger Principles of Biochemistry. 7th ed. WH Freeman & Company, New York, NY, USA.
  4. Rodwell, V and D. Bender. 2015. Harpers Illustrated Biochemistry. 30th McGraw Hill, New York, USA.
  5. Voet, D., Voet, J.G and C.W. Pratt. 2013. Fundamentals of Biochemistry, Life at the Molecular Level. 4th John Wiley & Sons. Inc. New York, NY, USA.
Biochem-506,BS Biochem, 5TH, EA-Winter 2022, Dr. Muhammad Ali, 01-09-2022
Sr.Ag No.Student’s NameGroup #Topic
12020-ag-8632Aaima-Tur-RehmanG1Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, 
22020-ag-8633Aleeha Khurram
32020-ag-8634Amna Abbas
42020-ag-8635Amna Batool
52020-ag-8636Aneeq Munsif
62020-ag-8637Aniqa Alwi
72020-ag-8638Areej Fatima Khan
82020-ag-8639Arham AliG2acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; 
92020-ag-8640Ayesha Rasheed
102020-ag-8642Bisma Yousaf
112020-ag-8643Esha Anwar
122020-ag-8644Esha Sarwar
132020-ag-8645Faiza Jabeen
142020-ag-8646Hadia TahirG3Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; 
152020-ag-8647Hamna Chaudhary
162020-ag-8648Hurara Ashraf
172020-ag-8649Ifra Asghar
182020-ag-8650 Ifra Asim
192020-ag-8652Iqra Shahid
202020-ag-8653Khadija Zahra
212020-ag-8654Kinza SameenG4Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  
222020-ag-8655Laiba Abrar
232020-ag-8656Laiba Kiran
242020-ag-8657Linta Mustafa
252020-ag-8658Mahnoor Muqadas
262020-ag-8659Maleeha Tariq
272020-ag-8660Moattar Fatima
282020-ag-8661Moazim RehmanG5Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains;
292020-ag-8662Muhammad Awais
302020-ag-8663Muhammad Faizan
312020-ag-8664Muhammad Kashif
322020-ag-8665Muhammad Muneeb Qamar
332020-ag-8666Muhammad Umar
342020-ag-8667Muneeba Naveed
352020-ag-8668Muntaha FatimaG6Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc
362020-ag-8670Narmeen Zahra
372020-ag-8671Nashra Nadeem
382020-ag-8672Nimra Ahmad
392020-ag-8673Nirma Sarfraz
402020-ag-8674Noor-ul-Huda
412020-ag-8675Noshaba Naz
422020-ag-8676Rida ZainabG7Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; 
432020-ag-8678Romaan Abeer
442020-ag-8679Sadaf Manzoor
452020-ag-8680Sadia Falak
462020-ag-8681Samra Murtaza
472020-ag-8682Shireen Faisal
482020-ag-8683Sufyan Arif
492020-ag-8684Tania JavedG8Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications. 
502020-ag-8685Tehreem Ali
512020-ag-8687Uqba Sarfraz
522020-ag-8688Usama Bin Imran
532020-ag-8689Zara Asmat
542020-ag-8690Shaloom Suhail
Biochem-506, BS Biochem, 5TH, EB-Winter 2022, Dr. Ali
Sr.Ag No.Student’s NameGroup #Topic
12020-ag-8641Ayesha ZiaG1Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, 
22020-ag-8691Abuhuraira
32020-ag-8692Alishba Tahir
42020-ag-8693Aliza
52020-ag-8694Aneesa Batool
62020-ag-8695Aqsa Sakhawat
72020-ag-8696Atta ur rehman
82020-ag-8697Ayesha Bibi
92020-ag-8698Ayesha IdreesG2acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; 
102020-ag-8699Ayesha Muzammal
112020-ag-8700Ayesha Rana
122020-ag-8701Ayesha shahzadi
132020-ag-8702Bakhtawer Arshad
142020-ag-8703Bisma Najeeb
152020-ag-8704Bismah Zafar
162020-ag-8705Esha AjmalG3Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; 
172020-ag-8706Fatima Shahid
182020-ag-8707Freeha Farooq
192020-ag-8708Ghulam Abbas
202020-ag-8709Hafiza Amna Farooq
212020-ag-8710Hafsa Saeed
222020-ag-8711Hamna Imran
232020-ag-8712Hurmat e AmnaG4Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  
242020-ag-8713Insha Noreen
252020-ag-8714Jamal shabab Ahmad
262020-ag-8715Javeria Nabeel
272020-ag-8716Jawad Hussain khan
282020-ag-8718Kinza Tariq
292020-ag-8720Maham Aqeel
302020-ag-8721Mahnoor G5Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains;
312020-ag-8722Mariam Amir
322020-ag-8723Maryam Eman
332020-ag-8725Mohsin Majeed
342020-ag-8726Muhammad Adnan
352020-ag-8727Muhammad Ali Hassan khan
362020-ag-8728Muhammad Fahad
372020-ag-8729Muhammad HamzaG6Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc
382020-ag-8730Muhammad Mubeen Yaseen
392020-ag-8731Muhammad Zeeshan
402020-ag-8732Muqadas Rasool
412020-ag-8733Rijja fatima
422020-ag-8736Samia Waqar
432020-ag-8737Saneeya Khalid
442020-ag-8738Shaher yar Hassan chaudharyG7Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; 
452020-ag-8739Sidra Rafiq
462020-ag-8740Talha Fareed
472020-ag-8741Tayyaba Mushtaq
482020-ag-8743Wardha Waheed
492020-ag-8744Zahra Zafar
502020-ag-8745Zainab IqbalG8Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications. 
512020-ag-8746Zarfeen Fatima
522020-ag-8747Zoya Shahbaz
532020-ag-8748Tuba Naheed
542020-ag-9638Muhammad Hamza Arbi
552020-ag-9639Farzeen Yaseen

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