Mid-term exam syllabus, Biochem-506: Ch-3 and Ch-4 of Lehninger. 

Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains; Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc; 

…. PLUS…. First 200 MCQs from chapters 3 of the book ” MCQs in Biochemistry”. MCQs from the taught concepts and book chapters will also appear in the exam.

Final exam syllabus, Biochem-506: Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications.

…. PLUS…. All MCQs from chapters 3 of the book ” MCQs in Biochemistry”. MCQs from the taught concepts and book chapters will also appear in the exam.

                                                        ______________________________________________________________________________

 

Assignments and presentations: 

  1. The weightage of the assignment and presentation will be decided later. 
  2. Start preparing your presentations and assignments.
  3. The presentations will also be started right after the mid-term exam.
  4. PPT file should not contain any designing/colours other than figures and diagrams.
  5. Slides should be in 16X9 ratio.
  6. Fonts of all header should be same and of all other text should be same. 
  7. For detailed guidelines about the presentation of research article, visit: https://www.lifesciencesorg.combiochem-720/
  8. Download the template ppt file to make your presentation. The link is here (copy this link and paste in a new tab).
  9. Strictly follow the ppt format and it is better if you write and paste your material in the same ppt file.

K. General Question to be asked during the presentation

  1. 1) Pathway or importance of gene/technology/discovery
  2. 2) Rationale
  3. 3) Conclusion of the full article
  4. 4) Conclusion of every figure
  5. 5) New findings presented in the article
  6. 6) Applications of the findings
  7. 7) Future prospective
  8. 8) Applications of the work
  9. 9) Principle of every technique used in the research article

Moreover, provide me a printed summary of your article containing the above headings given under ‘K’.

L. During Presentations, for EVERY FIGURE and graph, we may ask:

1. The Principle of the experiment.
2. The Reason for doing the experiment/s.
3. The Physiological importance of the figure.
4. The Conclusions of the figure
5. Prepare well objectively and subjectively

Biochem-506: Start preparing your presentations and assignments….. Assignment submission is the first class of next month, October 2022. The presentations will also be started after mid-term exam.

NO EXCUSE WILL BE ACCEPTED

______________________________________________________________________________

MCQs will be taken from the text-book and from chapter 3 of the book ” MCQs in Biochemistry”.

Link to download this book is given below:

https://b-ok.cc/dl/1055171/2292c5

______________________________________________________________________________

Microsoft Teams meeting
Join on your computer, mobile app or room device

Click here to join the meeting

Meeting ID: 316 824 288 013
Passcode: WNyjeA

 
 ______________________________________________________________________________

Microsoft teams will be used whenever online classes will be held. You must make your first name as your registration number. 

2017-ag-9382 Haidar Iftikhar

2017-ag-10077 Ahmad Faraz

Link to download the book ( MCQs in Biochemistry) is here.

 

BIOCHEM-506                   BIOCHEMISTRY OF PROTEINS                       3(3-0)

 

Theory

Amino acids; Structures of standard and nonstandard amino acids; Specialized biomolecules derived from amino acids; Classification and characteristics, acid-base properties, pKa values, titration curves and isoelectric pH; Covalent structure of proteins; Peptides, sequence, nomenclature and conventions for writing; Merrifield peptide synthesis; Classification, biological functions and properties of proteins; Techniques of protein purification; Salting out, chromatography, electrophoresis, isoelectric focusing;  Primary structure of protein and its determination; Secondary structure: a-helix, ß-pleated sheets, ß-bends, super secondary motifs, domains; Tertiary and quaternary structures; Protein folding and diseases of misfolding; Structures and biological functions of myoglobin, hemoglobin, collagen and α-keratin etc; Biodegradation of proteins and role of proteasome; Metabolic fate of amino groups; Nitrogen excretion, urea cycle and its regulation; Pathways of amino acid degradation; Biosynthesis of amino acids; In born errors of amino acid metabolism; Introduction to proteomics: Significance and applications.

 

Suggested Readings:

  1. Stryer, L. 2012. Biochemistry, 7th Edition, W. H. Freeman and Co. Lab Manual in Biochemistry, Immunology and Biotechnology, Arti Nigram, Archana Ayyagari. Tata McGraw-Hill Publishing Company Limited, New Delhi.
  2. Ferrier, D. R. 2017. Biochemistry: Lippincott’s Illustrated Reviews. 7th Lippincott Williams and Wilkins. U.S.A.
  3. Nelson, D.L and M.M. Cox. 2017. Lehninger Principles of Biochemistry. 7th ed. WH Freeman & Company, New York, NY, USA.
  4. Rodwell, V and D. Bender. 2015. Harpers Illustrated Biochemistry. 30th McGraw Hill, New York, USA.
  5. Voet, D., Voet, J.G and C.W. Pratt. 2013. Fundamentals of Biochemistry, Life at the Molecular Level. 4th John Wiley & Sons. Inc. New York, NY, USA.

BS Biochemistry, Biovhem-506A, Winter 2025-26, Dr. Muhammad Ali

Sr.

Ag No.

Student’s Name

Group

Research article for presentation and 1 page summary

1

2023-ag-8497

AYEZA ABBAS

G1

Training and quiz of some hands-on training workshop

2

2023-ag-8498

MISBAH IMTIAZ

3

2023-ag-8499

MAH JABEEN

4

2023-ag-8500

LAIBA MOHSIN

5

2023-ag-8501

LAIBA IKRAM

6

2023-ag-8502

SEHRISH AKBAR

G2

Training and quiz of some hands-on training workshop

7

2023-ag-8503

INFAL NASIR

8

2023-ag-8504

ASMA ALTAF

9

2023-ag-8505

IMAN NASIR

10

2023-ag-8506

ANEEZA FATIMA

11

2023-ag-8507

NOOR FATIMA IDREES

G3

Training and quiz of some hands-on training workshop

12

2023-ag-8508

LAIBA ALI

13

2023-ag-8509

EMAN KANWAL

14

2023-ag-8510

AREEBA MALIK

15

2023-ag-8511

TANZEELA AMEEN

16

2023-ag-8512

NOOR FATIMA

G4

Training and quiz of some hands-on training workshop

17

2023-ag-8513

HALEEMA AMIR

18

2023-ag-8514

ZUHAA IMRAN

19

2023-ag-8515

MAIDA MANZOOR

20

2023-ag-8516

FARWA KAMRAN

21

2023-ag-8517

TARBEEA KASAM

G5

Training and quiz of some hands-on training workshop

22

2023-ag-8518

VANEEZA SALEEM

23

2023-ag-8520

ROBINA SAJJAD

24

2023-ag-8521

KIRAN IRSHAD

25

2023-ag-8522

AARFA

26

2023-ag-8523

HINA FATIMA

G6

Training and quiz of some hands-on training workshop

27

2023-ag-8525

TAHREEM ASGHAR

28

2023-ag-8526

AMNA AHMAD

29

2023-ag-8527

ARFA RIAZ

30

2023-ag-8528

AENA ABUBAKAR

31

2023-ag-8529

AMNA AMEEN

G7

Training and quiz of some hands-on training workshop

32

2023-ag-8530

MOMNA SHAHZAD

33

2023-ag-8532

SEHAR ANDLEEB ASLAM

34

2023-ag-8534

AQSA ASHIQ

35

2023-ag-8536

HAMNA IDREES

36

2023-ag-8537

MISBAH AZHAR

G8

Training and quiz of some hands-on training workshop

37

2023-ag-8538

AFIA NISAR

38

2023-ag-8539

FATIMA IHSAN

39

2023-ag-8541

SEHRISH BATOOL

40

2023-ag-8542

MEMOONA BIBI

41

2023-ag-8543

DOSHAL LIAQAT

G9

Training and quiz of some hands-on training workshop

42

2023-ag-8544

TRABI TARA

43

2023-ag-8545

TAYYABA SAGHEER

44

2023-ag-8546

LAIBA SAEED

45

2023-ag-8547

RIMSHA

46

2023-ag-8548

PAKIZA ASHFAQ

G10

Training and quiz of some hands-on training workshop

47

2023-ag-8564

UME HABIBA

48

2023-ag-8565

MAHNOOR ZAKIR

49

2023-ag-8567

FAIQA

50